Welcome to the Bayesian Phylogenetic Footprint Homepage

This is the bayes aligner web application for phylogenetic footprinting. Please acknowledge the program authors on any publication of scientific results based in part on use of the program and cite the article in which the program was described (Zhu, J.;Liu, J.S.; Lawrence, C.E. Bayesian adaptive sequence alignment algorithms. Bioinformatics, 14:25-39, 1998). The bayes aligner is available under the Gnu Public License (GPL) from here. The bayes aligner FAQ is here.

Due to current server restrictions, total maximum sequence length is restricted to 4000 (query sequence length + comparison sequence length). If you have large jobs or need to run multiple sets of sequencs, please download the standaone version.

The current local time is: Wednesday, May 16, 2012 - 11:42:56 pm
Browser is: CCBot/1.0 (+http://www.commoncrawl.org/bot.html)


Enter your email address (you will be contacted by email when your job completes)
Email Address:  

Please enter Query sequence:(FASTA format)
or click on Browse button to upload a FASTA file


Please enter Comparison sequence:(FASTA format)
or click on Browse button to upload a FASTA file




Help: An annotated example