BALSA - Bayesian Algorithm for Local Sequence Alignment
Pairwise Sequence Alignment
Browse the BALSA Pairwise Sequence Alignment User Manual
Email Address:
Query sequence (FASTA format):
Comparison sequence (FASTA format):
First Scoring Matrix/Gap Opening Penalty/Gap Extension Penalty
BLOSUM_30
BLOSUM_40
BLOSUM_45
BLOSUM_50
BLOSUM_55
BLOSUM_62
BLOSUM_70
BLOSUM_80
PAM250
PAM10_DNA
PAM20_DNA
PAM30_DNA
PAM40_DNA
PAM50_DNA
PAM60_DNA
PAM70_DNA
PAM80_DNA
PAM90_DNA
PAM100_DNA
PAM110_DNA
PAM120_DNA
PAM130_DNA
PAM140_DNA
PAM150_DNA
PAM160_DNA
PAM170_DNA
PAM180_DNA
PAM190_DNA
PAM200_DNA
PAM210_DNA
PAM220_DNA
PAM230_DNA
PAM240_DNA
PAM250_DNA
PAM260_DNA
PAM270_DNA
PAM280_DNA
PAM290_DNA
PAM300_DNA
PAM310_DNA
PAM320_DNA
PAM330_DNA
PAM340_DNA
PAM350_DNA
PAM360_DNA
PAM370_DNA
PAM380_DNA
PAM390_DNA
PAM400_DNA
PAM410_DNA
PAM420_DNA
PAM430_DNA
PAM440_DNA
PAM450_DNA
PAM460_DNA
PAM470_DNA
PAM480_DNA
PAM490_DNA
PAM500_DNA
PAM_DNA
Second Scoring Matrix/Gap Opening Penalty/Gap Extension Penalty
BLOSUM_30
BLOSUM_40
BLOSUM_45
BLOSUM_50
BLOSUM_55
BLOSUM_62
BLOSUM_70
BLOSUM_80
PAM250
PAM10_DNA
PAM20_DNA
PAM30_DNA
PAM40_DNA
PAM50_DNA
PAM60_DNA
PAM70_DNA
PAM80_DNA
PAM90_DNA
PAM100_DNA
PAM110_DNA
PAM120_DNA
PAM130_DNA
PAM140_DNA
PAM150_DNA
PAM160_DNA
PAM170_DNA
PAM180_DNA
PAM190_DNA
PAM200_DNA
PAM210_DNA
PAM220_DNA
PAM230_DNA
PAM240_DNA
PAM250_DNA
PAM260_DNA
PAM270_DNA
PAM280_DNA
PAM290_DNA
PAM300_DNA
PAM310_DNA
PAM320_DNA
PAM330_DNA
PAM340_DNA
PAM350_DNA
PAM360_DNA
PAM370_DNA
PAM380_DNA
PAM390_DNA
PAM400_DNA
PAM410_DNA
PAM420_DNA
PAM430_DNA
PAM440_DNA
PAM450_DNA
PAM460_DNA
PAM470_DNA
PAM480_DNA
PAM490_DNA
PAM500_DNA
PAM_DNA
Third Scoring Matrix/Gap Opening Penalty/Gap Extension Penalty
BLOSUM_30
BLOSUM_40
BLOSUM_45
BLOSUM_50
BLOSUM_55
BLOSUM_62
BLOSUM_70
BLOSUM_80
PAM250
PAM10_DNA
PAM20_DNA
PAM30_DNA
PAM40_DNA
PAM50_DNA
PAM60_DNA
PAM70_DNA
PAM80_DNA
PAM90_DNA
PAM100_DNA
PAM110_DNA
PAM120_DNA
PAM130_DNA
PAM140_DNA
PAM150_DNA
PAM160_DNA
PAM170_DNA
PAM180_DNA
PAM190_DNA
PAM200_DNA
PAM210_DNA
PAM220_DNA
PAM230_DNA
PAM240_DNA
PAM250_DNA
PAM260_DNA
PAM270_DNA
PAM280_DNA
PAM290_DNA
PAM300_DNA
PAM310_DNA
PAM320_DNA
PAM330_DNA
PAM340_DNA
PAM350_DNA
PAM360_DNA
PAM370_DNA
PAM380_DNA
PAM390_DNA
PAM400_DNA
PAM410_DNA
PAM420_DNA
PAM430_DNA
PAM440_DNA
PAM450_DNA
PAM460_DNA
PAM470_DNA
PAM480_DNA
PAM490_DNA
PAM500_DNA
PAM_DNA
Fourth Scoring Matrix/Gap Opening Penalty/Gap Extension Penalty
BLOSUM_30
BLOSUM_40
BLOSUM_45
BLOSUM_50
BLOSUM_55
BLOSUM_62
BLOSUM_70
BLOSUM_80
PAM250
PAM10_DNA
PAM20_DNA
PAM30_DNA
PAM40_DNA
PAM50_DNA
PAM60_DNA
PAM70_DNA
PAM80_DNA
PAM90_DNA
PAM100_DNA
PAM110_DNA
PAM120_DNA
PAM130_DNA
PAM140_DNA
PAM150_DNA
PAM160_DNA
PAM170_DNA
PAM180_DNA
PAM190_DNA
PAM200_DNA
PAM210_DNA
PAM220_DNA
PAM230_DNA
PAM240_DNA
PAM250_DNA
PAM260_DNA
PAM270_DNA
PAM280_DNA
PAM290_DNA
PAM300_DNA
PAM310_DNA
PAM320_DNA
PAM330_DNA
PAM340_DNA
PAM350_DNA
PAM360_DNA
PAM370_DNA
PAM380_DNA
PAM390_DNA
PAM400_DNA
PAM410_DNA
PAM420_DNA
PAM430_DNA
PAM440_DNA
PAM450_DNA
PAM460_DNA
PAM470_DNA
PAM480_DNA
PAM490_DNA
PAM500_DNA
PAM_DNA